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Anabaena



Anabaena is a genus of filamentous N2-fixing cyanobacteria and are known for producing a suite of cyanotoxins which range from the neurotoxic anatoxins and saxitoxins to the hepatotoxic microcystins. Although this genus can be found throughout the world, microcystin-producing Anabaena blooms have not yet been described in Australia where saxitoxin is more predominantly described in this genus.

 


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INTRODUCTION

Many people have experienced the roll of a boat on a rough body of water—along with a queasy stomach and uneasy legs. The pitch of the boat and the distasteful physiological effects can be blamed on fluid motion. Luckily, people can escape an uncomfortable boat ride by eventually returning to port. But for organisms that live in the ocean there is no escape. They exist continuously in a dynamic fluid environment, which scientists do not yet fully understand

Omphalotus nidiformis, glowing with the lights off


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In the 1970s, the submarine Alvin descended to a mid-oceanic ridge to examine the generally steep and rocky bottom environments. The expedition came upon a series of fissures from which spewed hot water of partial volcanic origin. The mid-oceanic ridges are volcanically active, and the molten rock heats sea water in crack systems, often to a superheated state of several hundred degrees. The underwater landscape often consisted of a series of ``smoking chimneys'' with emanating hot water, loaded with high concentrations of various metals and dissolved sulfide.


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Music for Health

             <bgsound src="alhambra.mid">

I feel very passionately about the power of music to affect us, our mood certainly, but also physiologically.  The rhythm can entrain our pulse and respirations.  Listening to music can greatly enhance relaxation.  “Performing” music a very effective means of expression.  It’s also great for our self-esteem and confidence.

press to resumption 


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Gastroscopy EGD is a procedure which enables direct observation of esophagus, stocmach and duodenum. Before the examination, sedatives are given intravenously, then endscope is inserted from mouth to stomach. Endoscope is a long, flexible tube with diameter of about little finger. It enables doctors to observe the conditon of cavity of esophagus, stomach, duodenum and to detect-early cancers, with clear image helped by lighting from the tip. Depending the case. biopsies are taken as samples for futher check by pathologist

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next pagetable of contentsprevious page

PRECIPITATION, STORMS AND OTHER WEATHER PHENOMENA; CLIMATE

The principal features of weather systems that affect both land and sea and the humans, animals, and vegetation thereon are winds and precipitation. The latter comes in a variety of forms as discussed below. Most weather of consequence to people occurs in storms. These may be local in origin but more commonly are carried to locations in wide areas along pathways followed by active air masses consisting of Highs and Lows. This chart shows a meteorological classification of weather systems at various scales; the two categories of most interest to us are the Mesoscale and the Synoptic Scale (sometimes called Macroscale).

Scales of weather phenomena.

The key ingredient in storms is water, either as a liquid or as a vapor. The vapor acts like a gas and thus contributes to the total pressure of the atmosphere, making up a small but vital fraction of the total, as seen in this diagram:

Vapor as a constituent of the atmosphere; its amount is suggested by the pressure it contributes to the total air pressure.

Maps of the vapor pressure alone indicate its variability over a wide (subcontinental) region.

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SUNDRIES of SCIENTIFIC                    

                                www.glamor.tk

 

The sun's photosphere is often mistakenly referred to as the surface of the sun. In reality however, the sun's photosphere is only a "liquid-like" plasma layer made of neon that covers the actual surface of the sun. That visible layer we see with our eyes is more commonly known as penumbral filaments. This visible neon plasma layer, as well as a thicker, deeper plasma layer of silicon, entirely covers the actual rocky, calcium ferrite surface layer of the sun...

اغلب به اشتباه تصور می شود که فتوسفر، سطح خورشید است. در واقع فتوسفر خورشید فقط یک لایه پلاسمایی مایع مانند و ساخته شده از نئون است که سطح واقعی خورشید را می پوشاند. لایه قابل رؤیتی که ما با چشمانمان می بینیم اغلب، رشته های سایه روشن نامیده می شوند. این لایه پلاسمایی نئونی مرئی ، به خوبی ، یک لایه پلاسمایی عمیق تر و ضخیم تر مربوط به سیلیکون، به طور کامل لایه سطحی فریت کلسیم مربوط به خورشید که از سنگ واقعی است می پوشاند...

   www.glamor.tk

www.prowl.blogfa.com         


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                                    Jalap

 

 

  • Common name:  Jalap
  • Source: www.glamor.tk
  • CONDUCTION: www.prowl.blogfa.com
  • Writer: nima saketi
  • Email: prowl.nima@gmail.com
  • Botanical Source:  Jalap has a fleshy, tuberous, pyriform root, with numerous roundish tubercles. The stems are numerous, smooth, brownish, very slightly rough, with a tendency to twist, twinning about surrounding bodies. The leaves are long petioled, the first hastate, the succeeding ones cordate, acuminate, mucronate, smooth, deeply incised at base, and conspicuously veined beneath. Peduncles axillary, 2-flowered, rarely 3, twisted, as long as the petioles. Calyx has no bracts; composed of 5 smooth, obtuse, mucronate sepals. The corolla is funnel-shaped, purple, with a long, somewhat clavate tube, and an undulated limb, with 5 plaits. Stamens 5; filaments smooth, unequal, and longer than the corolla tube; anthers white, oblong-linear, and projecting. Ovary slender, and 2-celled; stigma simple, capitate, and deeply furrowed. Capsule 2-celled; cells 2-seeded; seeds unknown.
  • History:  It is only within comparatively recent years that any certainty has existed in relation to the plant from which jalap root is obtained. It was first spoken of in 1609, as Bryonia mechoacana nigricans, then it was regarded by Ray as Convolvulus Americanus jalapium dictus, after which Tournefort, being deceived by persons who asserted that they had seen the plant growing, referred it to a species of Mirabilis. Balfour placed it as the Exogonium purga, and Linnaeus named it Convolvulus jalapa, and thus much difference of opinion existed until, in 1827, when Dr. J. R. Coxe, of Philadelphia, succeeded in obtaining perfect flowers from roots of the true plant furnished to him from their native soils, and thus first made its true character known to the scientific world.

The name of Ipomoea purga was bestowed upon the plant by Wenderoth and Hayne, but as the authorities of this country have, undoubtedly, the first claim, it may be viewed as fixed that I. jalapa, the name originally given to it by Nuttall, is the official plant.

The jalap plant is found in a deep, rich, vegetable soil, at an elevation of nearly 6000 feet above the level of the sea, growing in Mexico, near Chicanquiaco and Xalapa, from which last named place it is usually exported, and from which it has also obtained its name. It is generally imported in bags, containing 100 or 200 pounds. The root is the official part, and is gathered in all seasons, but principally in March and April, when the young shoots are appearing. The plant may be cultivated in the southern parts of the United States.

In 1866, Dr. D. Hanbury planted a root or tuber of Jalap in a garden, near London, and obtained promising results. It is now successfully grown in Jamaica and in India, especially in the Nilgherry hills of that country.

According to Warden (1887), the jalap tubers of India are not of first quality. Jalap is a very variable drug, much of it being of an inferior quality. The best kind is that known as the Vera Cruz variety. Several related, and often inferior drugs, e. g., Tampico jalap, have appeared on the market.

  • Description: 

When fresh, the root is black externally, white and milky within, and varies in size according to its age, from that of a walnut to that of a moderate-sized turnip. It is dried in net bags over the fire, sometimes whole, and sometimes in sections. It is often preyed upon by insects which, however, leave its active part untouched, rendering it consequently more energetic. Jalap thus preyed upon is used for procuring the resin, but should not be given internally, except in much smaller doses than for the ordinary root.

Jalap is rather difficult to polvorize, but if triturated with cream of tartar, sugar of milk, or other hard salt, the process of polvorization is facilitated, and the powder rendered much finer. When in powder, the color is a pale grayish-brown, and when in contact with the mucus membrane of the air-tube, causes coughing and sternutation, with an increased discharge of saliva. Its solvents are water, alcohol, or spirits. Water takes up a small portion of its cathartic principle, but considerable of an amylaceous and mucilaginous extractive matter. Alcohol dissolves the resin, on which its cathartic virtues depend. Ether only partially dissolves it. Diluted alcohol completely extracts its active properties.

  • Action, Medical Uses, and Dosage:  Jalap is an irritant and cathartic, operating energetically, occasioning profuse liquid stools with griping, and sometimes sickness at stomach, or even vomiting. Large doses produce violent hypercatharsis, sometimes terminating fatally.

When applied to a wound, it is said to induce purgation. Notwithstanding its activity, it is a safe and convenient purgative, much in use among the profession, and is useful in all cases where it is desirable to produce an energetic influence on the bowels, or to obtain large evacuations.

If intestinal inflammations are present it should not be used.

United with the bitartrate of potassium, its hydragogue properties are much increased, and thus it proves beneficial in dropsies, as well as in some forms of scrofula. Jalap, however, is suitable for excitable, active conditions, and may be used where a cooling effect is desired, as when it is necessary to evacuate the bowels in febrile disorders.

Inflammatory conditions of the biliary apparatus are exceptions to the rule that it should not be used in gastro-intestinal inflammations. When the rectum is impacted with a hard, fecal mass, the expulsion of the latter is facilitated by the purgative action of jalap, which greatly augments the intestinal secretions; all cases of constipation, due to dryness of the mucus membranes, through inactivity of the intestinal glands, are relieved by jalap. The dose for this latter purpose may be 5 grains in the morning, repeated for several days. When a stimulating laxative can not be used because of hemorrhoids, jalap may be employed, and it is likewise efficient as a derivative in cerebral disorders.

It is stated that the aqueous extract of jalap, the root having been previously exhausted of its resin by alcohol, will exert no cathartic influence, but will operate as a powerful diuretic, but I have not been able to procure this effect, though having made a trial in several cases (King). Three grains of jalap, taken an hour before each meal, act as a slight nauseant, destroying a desire for food among persons who are apt to eat too freely. If jalap is digested in ether, its nauseous taste and smell will be wholly removed without lessening its cathartic power. A biscuit is sometimes made for those to whom it is extremely nauseous and disagreeable; 5 drachms of jalap, 30 of sugar, and 4 ounces of flour, are made into 15 biscuits after the usual mode; 1 biscuit is a dose. The tendency of jalap to gripe and nauseate, may be obviated by adding to the dose 1 or 2 grains of camphor, or 3 grains of cloves. The dose of powdered jalap is from 10 to 30 grains (the aqueous extract ought not to be used, except as a diuretic)of the tincture, from 1 to 4 fluid drachms; the resin, or alcoholic extract, is given in from 2 to 8-grain doses, being usually rubbed up with sugar, or in emulsion, for the purpose of lessening its disposition to produce painful irritation of the intestinal mucus membrane.

As a hydragogue, 2 drachms of the bitartrate of potassium are added to 10 or 30 grains of polvorize jalap. Convolvulin (rhodeoretin) purges violently in 3 or 4-grain doses, and appears to be the active principle of jalap. Specific jalap, 10 to 20 drops every 4 hours for its specific uses. Though not an anthelmintic, jalap is often given to hasten the expulsion of worm, after agents have been given for their stupefaction or destruction.

  • Specific Indications and Uses:  Constipation from deficient secretion of intestinal glands; pain and griping in lower bowel; colic, with stercoraceous vomiting; general gastro-intestinal torpor.
  • TAMPICO JALAP:  This is the Mexican Purga de Sierra Gorda, and is derived from the Ipomoea simulans, (Hanbury). It much resembles the jalap tuber in appearance, odor, and taste. While it is difficult to distinguish some of the tubers from those of true jalap, most of the Tampico tubers are smaller and more elongated, more corky and shriveled, and show an absence of little scars crosswise the roots so noticeable in true jalap. It yields a resin (10 to 15 per cent). Fl?ckiger obtained 10 per cent of it. It is completely soluble in ether. Spirgatis (1870) named the resin tampicin. It is converted into tampicic acid by means of concentrated alkalies. Acids resolve it into sugar and tampicolic acid , thus showing its glucosidal character, analogously to that of convolvulin. It has purgative properties.
  • Mirabilis jalapa (Linn?): The tubers of this species, which somewhat resemble jalap, may be distinguished by the presence of needle-like raphides of calcium oxalate.
  • Ipomoea turpethum, (R. Brown): Turpeth root. This is the Turbith v?g?tal of the French Codex. It is not very similar in appearance to jalap. It contains a resin (4 per cent), of which turpethin, the ether-soluble portion, a glucosid, behaves like resin of jalap in relation to acids and alkalies. Bases convert it into turpethic acid, methyl-crotonic acid, traces of formic, and methyl-ethyl-acetic acids, etc.
  • Ipomoea nil, Roth (Convolvulus nil, Linn?; Pharbitis nil, Choisy):  Seeds called kaladana in India, and are slightly purgative. They are black, triangular, with a rounded back, and have a sweetish taste, followed by an acrid sensation. They yield pharbitisin (identical with convolvulin) and a volatile oil. The seeds are roasted and given in powder.
  • Ipomoea triloba (Pharbitis triloba, Ipomoea hederacea):  The seeds of the Japanese plant known as kengashi, yield convolvulin, and are employed like kaladana.
  • MECHOACAN: This product, probably of a convolvulaceous plant, comes in gray or whitish circular sections or fragments, somewhat farinaceous, and destitute of the circles of resinous cells. It sometimes occurs as an adulterant of jalap, but its detection is not difficult. It is feebly cathartic.
  • ORIZABA ROOT. This is variously known as Woody, Light, or Fusiform jalap, Male jalap, Jalap tops or stalks, and is the Mexican Purgo macho. It is derived from the Ipomoea orizabensis, Ledanois. This root is fusiform, and sometimes occurs in commerce in transverse slices, but more frequently in rectangular blocks. Its longitudinal wrinkles are deeper than those of jalap. Its color is also lighter. From the latter it may be known by the radiations on transverse section, and by leaving, when fractured, projecting bundles of fibrous vessels. Chemically, it closely resembles jalap. Its chief constituent is jalapin , so named by Mayer (para-rhodeoretin of Kayser), and should not be confounded with the jalapin of Buchner and Herberger, which is convolvulin. Mayer's jalapin differs from convolvulin in that ether and acetone freely dissolve it. Poleck (1892) proposes for it the name orizabin, as Prof. Maisch has done in 1887. Alkalies change it into water-soluble jalapic acid . Diluted acids convert it into sugar and jalapinol , insoluble in water; probably identical with jalapinolic acid , obtainable from scammony resin. Jalapin (orizabin) is oxidized by nitric acid to carbonic, isobutyric, and ipomic acid, the latter an isomer of sebacic acid (compare convolvulin). Jalapin (Mayer's) has been shown by Spirgatis to be identical with scammonin, both in chemical and purgative qualities, a fact more recently confirmed by Th. Poleck.
  • Ipomoea pandurata, Meyer (Convolvulus panduratus, Linn?):  Wild potato.
    This plant, likewise known as Wild jalap, Man in the Ground, Mechameck, Man of the Earth, etc., has a perennial, very large, tapering root, with several stems from the same root, from 4 to 8 feet long, round, slender, purplish, smooth or nearly so, trailing or twinning. Leaves 2 or 3 inches long, about the same width, broadly cordate at base, acuminate, entire, or wavy, alternate, sometimes panduriform, smooth, deep-green above, paler beneath, on long petioles. Flowers white, dull-purple toward the base, large, opening in the forenoon; peduncles axillary, longer than the petioles, cymose, branching at the top, several-flowered. Corolla large, campanulate, 2 or 3 inches long. Calyx smooth, 5-parted, naked; sepals ovate-oblong stamens white, the length of the tube; anthers oblong. Style white, thread-like; stigma capitate, bilobed. Capsule oblong, 2-celled, 4-seeded, without intermediate partitions (L.?W.?G.).
  • Wild potato is indigenous to the United States, growing in light and sandy soils, from Connecticut and west New York, southward and westward, and flowering from June to August; it rarely grows North, but is found in some parts of South America. The root is the medicinal part, it is very large, being from 2 to 8 feet in length, and from 2 to 4 or 5 inches in diameter, branched at the bottom, brownish-yellow externally, whitish and lactescent internally, furrowed lengthwise, and of a disagreeable odor and bitter, rather acrid taste; about 75 per cent in weight is lost in drying. It is generally met with in transverse, circular sections, which are somewhat tawny externally, whitish with diverging lines internally, and not readily powdered; the powder is somewhat grayish. Water or alcohol extracts its active properties, but diluted alcohol or spirits are its best solvents. It contains resin, bitter-extractive, sugar, starch, gum, a body resembling tannic acid, etc. The resin is purgative. It consists of an acid, and a non acid portion. It is a glucosid, and exists to the extent of 1.5 per cent.

The active principles of this plant are unknown. It possesses mild cathartic properties, acting gently in doses of from 40 to 60 grains of the powdered root. The infusion taken in wineglassful doses every hour, has been effective in dropsy, strangury, and calculous affections. It seems also to exert an influence over the lungs, liver, and kidneys, without excessive diuresis or catharsis. The saturated tincture is more energetic than the powdered root, decoccion, or extract. It is asserted that the Indians can handle rattlesnakes with impunity after wetting their hands with the milky juice of this root.

Copyright: www.prowl.blogfa.com

2007-12-25

 

Posted by نيما ساكتي at | Link To This Post ID 129 | Topic : مقالات انگلیسی DISSERTATION
Abstract

The role of advanced glycation end-products (AGEs) in the development of complications in individuals with insulin-dependent diabetes mellitus (IDDM) has been explored by previous studies. However, the relationship between these reactive AGEs and diabetic complications are still somewhat unknown. Glycation (nonenzymatic glycosylation) processes, also known as the Maillard reactions, are a series of reactions between carbohydrates and free amino groups of proteins. The preliminary intermediates, (Amadori products; 1-amino, 1-deoxy, 2-ketoses), ultimately result in the formation of AGEs. AGEs in humans have been predominantly chemically characterized by the detection of pentosidine and N-carboxy-methyl lysine (CML). Both pentosidine and CML have been found to accumulate in skin and lens collagen matrix at accelerated rates in diabetic patients. Indications are that collagen in IDDM patients undergoes widespread chemical alterations that result in decreased solubility, alter binding affinities to enzymes, increased stability, accelerated cross-linking and increased browning. Accumulation of AGEs with structural alterations result in altered tissue properties that contribute to the reduced susceptibility to catabolism and to the aging of tissues. Also, when accelerated by hyperglycemia, AGE accumulation is believed to contribute to the gradual development of diabetic complications. Pentosidine concentrations in the skin of IDDM patients are often elevated and correlate to the severity of complications. It has also been suggested that pentosidine is not just a subset of diabetic complications but rather a general diagnostic feature of the disease process.

Introduction

The pathogenesis of diabetic complications continues to be a central issue in current diabetes research (15). One of the most prevalent metabolic syndromes world-wide, diabetes mellitus (DM), is characterized by hyperglycemia resulting in short-term metabolic changes in lipid and protein metabolism and long-term irreversible vascular and connective-tissue changes. These changes include diabetes-specific complications such as retinopathy, nephropathy and neuropathy and complications of the macro-vasculature such as atherosclerosis; potentially resulting in heart disease, stroke and peripheral vascular disease (11). Links between chronic hyperglycemia and the development of long-term diabetic-specific complications have been discovered and are yet not completely understood (11, 23).

[b]Figure 1.[/b] Structure of fluorophore P (Pentosidine).
Figure 1. Structure of fluorophore P (Pentosidine). (Click image for larger version)


Glycation, a chemical modification of proteins with reducing sugars, indicates a possible explanation for the association (7, 15) between hyperglycemia and the wide variety of tissue pathologies. Research suggests that reducing sugars can react with the amino groups of long-lived proteins to produce non-enzymatic cross-links (19, 23). Formations of these cross-links occur as end-stage products of the Maillard reaction; they are known as advanced glycation end-products (AGEs) (7, 20).

AGEs are a class of complex, often unstable, reactive compounds formed in excess during aging and diabetes mellitus (23). According to the “glycation hypothesis,” accumulation of AGEs alters the structural properties of tissue proteins and reduces their susceptibility to catabolism (7, 23). It has been shown that the process of AGE formation is accelerated by hyperglycemia (4, 7, 16). Some of the protein alterations observed in diabetic patients resemble those in much older, non-diabetic patients, suggesting ‘diabetes induced early aging’ (20).

The chemical nature of AGEs in vivo is largely unknown, but there is a growing population of structurally-defined AGE adducts such as pyrraline, pentosidine, N-carboxy-methyl lysine (CML) and crossline that are found to be elevated in diabetic tissues (7, 15, 21). The best found chemically characterized AGEs in humans are pentosidine and CML (see Figures 1, 2) (16, 23). Some of the highest levels of pentosidine have been detected in individuals afflicted with DM (19). Evidence has shown that elevated skin pentosidine levels in individuals with DM correlate with the severity of the complications (19). Initial investigations have shown that pentosidine can be detected in smaller levels in various tissues of noncollagenous origin, including the blood and the human lens (19).

[b]Figure 2.[/b] Structure of carboxyl methyl lysine (CML).
Figure 2. Structure of carboxyl methyl lysine (CML). (Click image for larger version)


Pentosidine is a fluorescent crosslink with visible wave length fluorescence, making it easy to detect (15). Methods for synthesizing and detecting AGEs such as pentosidine have been proposed in various studies (7, 14, 19). Prevention of AGE-mediated cell toxicity has been proposed as a key strategy in preventing the onset of diabetic complications and some age-related pathology (21). This review will continue to analyze evidence that AGEs play a significant role in diabetic complications considering various anti-AGE therapeutic strategies that appear to reduce the severity and onset of complications (4, 10, 12, 13, 15, 23).

Long-Term Complications Due to AGEs

Protein glycation and AGE formation are accompanied by increased free radical activity that contributes to the bimolecular damage in diabetes (1, 13, 23). AGEs act as mediators and can initiate a wide range of abnormal responses in cells and tissues such as the inappropriate expression of growth factors, alterations in growth dynamics, accumulation of extra-cellular matrix and initiation of cell death (21, 23), through decreased solubility, elasticity and enzymatic affinities in long-living proteins such as collagen (8, 15).

A number of these chemical and physical skin changes occur in human skin collagen with age and appear to be accelerated in diabetes (12, 13). AGE cross-linking reactions in collagen contributes to diabetic circulatory complications such as vascular stiffening and myocardial dysfunction (22, 23). Although the mechanisms underlying the development of the complications of diabetes are not fully understood, there is now a consensus that hyperglycemia does play an important role in the development of retinopathy, nephropathy, neuropathy and joint stiffness (10, 13). For example, increased serum and tissue levels of AGEs due to a reduced removal by the kidneys have been evident in end-stage renal failure (23). In vitro and in vivo studies have shown that AGEs result in irreversible cross-links in long living matrix structural proteins such as type IV collagen, laminin and fibronectin (23).

Biochemistry of AGEs

The formation of AGEs is implicated by the pathogenesis of long-term complications of diabetes (3, 6). There appears to be two general pathophysiologic mechanisms by which hyperglycemia leads to irreversible tissue damage (4). Intracellular hyperglycemia can result by increased flux through different metabolic pathways, changing glomerular basement membrane. Increases in the polyol pathway activity results in metabolic changes too, consequence of decreasing levels of NADPH, gluthathione and myoinositol (4).

A major consequence of hyperglycemia is excessive nonenzymatic glycosylation of proteins (3, 4, 10), primarily due to long-term exposure to elevated glucose concentrations (12). Nonenzymatic glycation may be occurring, although at a much slower rate than that seen most in IDDM patients (3). Nonenzymatic protein glycation (Mallard Reaction) by glucose is a complex cascade of condensations, rearrangements, fragmentations and oxidative modifications (3). Glucose chemically attaches to proteins and nucleic acids without the aid of enzymes, increasing the formation of AGEs (4). These AGEs form on intra- and extracellular proteins, lipids, and nucleic acids, leading to the generation of protein fluorescene and the irreversible cross-links (1, 11, 15). The formation of AGEs requires the reaction of reducing sugars like glucose, fructose, galactose, mannose and ribose (22). Interestingly, glucose is among the least reactive of the common sugars, perhaps leading to its evolutionary selection as the principle free sugar in vivo (1, 22).

For a given protein, the extent of nonenzymatic glycosylation is determined by the sum of effects of a number of independently acting variables such as pH, temperature, protein concentration, etc. (4, 9). Glucose concentration and incubation time are the most clinically relevant variables affecting the extent of nonenzymatic glycosylation (4). Characteristic to diabetics, increased levels of glucose concentrations cause the level of accumulated Amadori products on proteins to rise (4).

Non-enzymatic glycosylaton is a common posttranslational modification of proteins in vivo, resulting from reactions between glucose and amino groups on proteins, this process is coined the “Maillard reaction” and results in the formation of AGEs (1, 8, 11, 15, 23).

The Maillard Reaction (Non-enzymatic glycosylation)

AGEs form via a non-enzymatic condensation reaction between reducing sugars and -amino group or N-terminal groups (7, 10, 15, 16, 21-23) via a neucleophilic addition with formation of a Schiff base (1, 4). The Schiff base rapidly reaches an equilibrium level in vivo, reflecting the surrounding glucose concentration.

The chemically unstable Schiff bases form relatively fast and are highly reversible (4, 21, 22). Over a period of weeks, a slow chemical rearrangement of the Schiff base occurs, resulting in the formation of stable yet highly reversible ketoamine (Amadori product), an initial reaction product and intermediate in the formation of AGEs (1-5, 21, 22). Amadori adduct formation is slower but much faster than the reverse reaction, leading to accumulation of Amadori glycation products on various proteins (4, 21, 22). Reactive AGE-forming intermediates can arise from oxidative reactions (“glycoxidation”) of free sugar or from initial Schiff base condensation products with protein amino groups, rather than just from the “classical” Amadori rearrangement (3). The presence of AGE cross-links in collagen is suggested to contribute to the severity of diabetic complications (1, 6, 12) although the degree to how much these relate is unknown.

Adducts of Glycation

The chemical nature of important AGEs as they occur in vivo is largely unknown due to their heterogeneous and unstable nature; however, there is a growing population of structurally defined AGE adducts such as pyrraline, pentosidine and CML, all of which have been found at elevated levels in diabetics (1, 4, 21). The two most commonly measured AGEs are CML and pentosidine, which are glycoxidation products, formed by sequential glycation and oxidation reactions (3). The adduct formed by glycation of lysine residues in protein is termed fructoselysine (FL) (see Figure 3), and levels of FL in hemoglobin, plasma proteins, collagen, hair, lens and numerous other proteins in the body are also known to increase in proportion to the degree of hyperglycemia in diabetes (8).

[b]Figure 3.[/b] Structure formed by glycation of lysine residues in protein, fructoselysine (FL).
Figure 3. Structure formed by glycation of lysine residues in protein, fructoselysine (FL). (Click image for larger version)


Early studies of nonenzymatic glycosylation showed that this process ultimately gives rise to pigmented, fluorescent and glucose-derived protein crosslinks (4). These pigmented, fluorescent compounds have been used to study the relationship between AGE formation and various tissue pathologies (2, 17, 19). Along with the brown color, fluorescence is one of the qualitative properties of AGEs (22). The fluorescent AGE crosslink pentosidine was first isolated and identified from dura mater collagen and has been identified in vivo in skin collagen and plasma proteins of diabetic patients (3, 7, 22).

Pentosidine Formation and Significance

Pentosidine has been detected and measured in tissue proteins by chemical and chromatographic methods (2, 17, 19). Pentosidine is unique in that it can be formed by the reaction of lysine and arginine, forming a fluorescent crosslink with any of several carbohydrate precursors including glucose, ribose, ascorbic acid, and 3-deoxyglucosone (see Figure 2) (7, 22). The development of increased fluorescence of proteins in diabetes and aging is enhanced by oxidation reactions and carbohydrate or lipid-dependent processes (7). It has been proposed that AGEs such as pentosidine are in fact active intermediates in the cross-linking of proteins and formation of reactive oxygen species (2).

Pentosdine has been found in a variety of tissues of human origin including skin, tracheal cartilage, cortical bone, aorta, cardiac muscle, lung, liver, kidney, lens, red blood cells, and blood proteins (19). Pentosidine has been found to accumulate in the skin and lens at accelerated rates in diabetics (11, 15). Overall, correlations between skin pentosidine levels and the severity of long-term complications indicate that pentosidine parallels severity (19). Formation of elevated skin pentosidine levels in IDDM patients with severe complications, although unclear, has been associated to poorer metabolic control compared to those with less severe complications (19). Therefore, skin pentosidine would be formed primarily from glycated skin collagen and should reflect cumulative glycohemoglobin AIC values which are now a chemically accepted indicator of glycemic control (4, 7).

Preventative Measures

Poor metabolic control and other characteristics of IDDM result in diabetic nephropathy, neuropathy, retinopathy, atherosclerosis and difficulty in healing wounds (1). Preventative measures for clinical problems that may be the result of accelerated AGE production with IDDM include improvement of glycemic control (4, 10). Recent studies have shown that when the quality of patient control is good (for example, patients who maintain a normal blood-glucose level) the concentrations of the AGE-products, CML and pentosidine, are typically lower (18). However, recent clinical trials suggest that when complications are already present, improvement of glycemic control alone may not be sufficient to prevent the continued progression of these pathologic processes, potentially due to the irreversibility of AGE formation as well as poor clearance mechanisms.

[b]Figure 4.[/b] Aminoguanadine (AG), a structurally identified AGE inhibitor.
Figure 4. Aminoguanadine (AG), a structurally identified AGE inhibitor. (Click image for larger version)


AGE inhibitors

Due to detrimental effects of AGEs, researchers attempt to find inhibitors of the advanced glycation process (6).Brownlee et al. suggest that optimal future therapies to minimize tissue damage may require pharmacologic agents that directly interfere with the self-perpetuating component of hyperglycemia-initiated tissue damage (4). Aminoguanadine (AG) (see Figure 4), an inhibitor of advanced glycation reactions in vitro, has been found to inhibit the development of diabetic complications in animal models of diabetes. (4, 12). Booth et al. suggest that these inhibitors can potentially react as a hydrazine with carbonyls of Amadori intermediates or can hunt for reactive dicarbonyls through its guanidinium moiety. However, the mechanism of AGE formation is only partially understood, making it difficult to identify the precise chemical products responsible for in vivo damage and thus impede the development of specific inhibitors.

Summary

A major consequence of hyperglycemia is excessive non-enzymatic glycosylation of proteins resulting in various protein-protein cross-links and non-crosslinked structures (4, 10, 22). AGE products contribute to long term complications of IDDM patients (2, 4, 17, 19). With the increasing rate of occurrence of IDDM, it is important to increase knowledge about AGEs and AGE-inhibitors. Through research it may be possible and beneficial to find substances that can be used to decrease or predict the occurrence of long term complications of AGE formation to improve the quality and length of life for IDDM patients.

References

1. Ahmed, N. (2005) Advanced glycation end products—role in pathology of diabetic complications. Diabetes Research and Clinical Practice 67, 3-21.

2. Baynes J. et al. (1999) Role of oxidative stress in diabetic complications. Diabetes 48, 1-9.

3. Booth A. et al. (1997) In vitro kenetic studies of formation of antigenic advanced glycation end products (AGEs). Journal of Biological Chemistry 272, 5430-5437.

4. Brownlee, M. et al. (1984). Nonenzymatic glycosylation and the pathogenesis of diabetic complications. Annals of Internal Medicine 101, 527-537.

5. Chellan P, et al. (2001) Early glycation products produce pentosidine cross-links on native proteins. Journal of Biological Chemistry 276, 3895-3903.

6. Degenhardt, T. et al. (1999) Aminoguanidine inhibits albuminuria, but not the formation of advanced glycation end-prodcuts in skin collagen of diabetic rats. Diabetes research and clinical practice 43, 81-89.

7. Dyer, D.G. (1993) Accumulation of maillard reaction products in skin collagen in diabetes and aging. Journal of Clinical Investigation 91, 2463-2469.

8. Dunn, J. et al. (1989). Oxidation of glycation proteins: age-dependent accumulation of N-(carboxylmethyl)lysine in lens proteins. Biochemistry 28, 9464-9468.

9. Eble, A.S. et al. (1983) Nonenzymatic glucose and glucose-dependent crosslinking or protein. Journal of Biological Chemistry 10, 9406-9412.

10. Forbes J. M. et al. (2003). Role of advanced glycation end products in diabetic nephropathy. Journal of American Society of Nephrology 14, S254-S258.

11. Hudson, J. et al. (2002) Glycation and diabetes:The RAGE connection. Current Science 83, 1515-1521.

12. Kochakian, M. (1996) Chronic dosing with aminoguanidine and novel advanced glycosylation end product-formation inhibitors ameliorates cross-linking of tail tendon collagen in STZ-induced diabetic rats. Diabetes 45, 1694-1700.

13. Lyons, T. et al. (1991). Decrease in skin collagen glycation with improved glycemic control in patients with insulin-dependent diabetes mellitus. Journal of Clinical Investigation 87, 1910-1915.

14. Maurizio, S. et al. (1995). Role of advanced glycation end-products (AGE) in late diabetic complications. Diabetes Research and Clinical Practice 28, 9-17.

15. McCance, D. et al. (1993) Maillard reaction products and their relation to complications in insulin-dependent diabetes mellitus. Journal of Clinical Investigators 91, 2470-2478.

16. Price, D. et al. (2001) Chelating activity of adcanced glycation end-product inhibitors. Journal of Biological Chemistry 276, 48967-48972.

17. Sajithlal, G. et al. (1998) Advanced glycation end products induce crosslinking of collagen in vitro. Biochimica et biophyisica Acta 1407, 215-224.

18. Schiel, R. et al. (2003) Improvement of the quality of diabetes control and decrease in the concentration of AGE-products in patients with type 1 and insulin-treated type 2 diabetes mellitus studied over a period of 10 years (JEVIN). Journal of Diabetes and Its Complications 17, 90-97.

19. Sell, D. et al. (1991) Pentosidine: a molecular marker for the cumulative damage to proteins in diabetes, aging, and uremia. Diabetes/Metabolisim Reviews 7, 239-251.

20. Sensi, M. et al. (1995) Role of advanced glycation end-products (AGE) in late diabetic complications. Diabetes Research and Clinical Practice 28, 9-17.

21. Stitt, A.W. (2001) Advanced glycation: an important pathological even in diabetic and age related ocular disease. British Journal of Ophthalomol 85, 746-753.

22. Ulrich, P and Cerami A. (2001) Protein glycation, diabetes and aging. Recent Progress in Hormone Research 56, 1-22.

23. Wautier, J.L. and Guillausseau, P.J (2001) Advanced glycation end products, their receptors and diabetic angiopathy. Diabetes Metabolism 27, 535-542.
 
Posted by نيما ساكتي at | Link To This Post ID 127 | Topic : مقالات انگلیسی DISSERTATION

HMS Onslow & HMS Pakenham
the 1/700 Tamiya 'O' Class Destroyer

By: Keith Butterley


History
The 'O' and 'P' class destroyers were the first of their kind built under the Emergency War Programme. They were born of the need for the Royal Navy to quickly replace many of its aging destroyers due to the clouds of war gathering in Europe. It was decided in an effort to cut costs and building time, that they would use the same machinery as the 'J' class, but with a simpler armament. These ships were designed for general fleet, patrol and escort duties. The 'O' class was ordered on September 3, 1939, with the HMS Oribi being the first completed in July 1941. Other ships were the Obdurate, Obedient, Offa, Onslaught, Onslow (leader), Opportune and Orwell. The similiar 'P' class was ordered on October 20, 1939, with the HMS Porcupine being finished in June 1941. The rest of the class was Pakenham (leader), Paladin, Panther, Partridge, Pathfinder, Penn and Petard.

All these ships served with distinction throughout the war. Their most famous action occurred in December 1942, while escorting convoy JW51B the Onslow, Obedient, Orwell, Obdurate, Oribi and the 'A' class destroyer Achates held off the Lutzow, Hipper and six KM destroyers for six hours. Finally HM cruisers Jamaica and Sheffield arrived and finally drove the Germans off, without loss. The Paladin, Oribi and Onslow were also responsible for individual U-boat kills, while the Pakenham and Petard shared one. The Pakenham, Panther and Porcupine were all lost while in the Mediterranean.

The Tamiya kit builds up to a fairly good representation of this class. However out of the box they can only be built as the two leaders, Onslow and Pakenham, modification of the aft gun house is required to do other members of the class. I relied heavily on Nat Richards' article from the IPMS Quarterly Review to make the changes in the kit that was necessary to make an accurate leader. The White Ensign Models O Class PE set was used to give them that much needed extra detail. To bring the kit up to a proper 1/700 scale, you need to lengthen the hull 1mm., however I chose not to do this, too scary! I scratch-built the RDF shacks, behind the bridge using plastic card, as they did not come with the kit. The splinter shields around the 4" HA gun were filed away and replaced them with PE fret. I am sure that if scaled out the originals would have been akin to Maginot Line fortifications.


HMS Pakenham

I chose to model the HMS Onslow with her lattice mast. This was added during her re-fit after the Barents Sea battle. I painted her in the Special home Fleet Destroyer Design white/G45/G20/B30. This scheme required a lot of masking due to its many sharp angle lines, but it certainly turns the kit into quite a stunning model. The Pakenham was done in a Western Approaches scheme WA blue/white. To the best of my knowledge she never carried this scheme, but I have always liked it, so there !!!


This kit does require a lot of work to make a decent model, but with the addition of the morePE set and the modifications per Nat Richards, it can be turned into a very good model.

Copyright © prowl2003

Posted by نيما ساكتي at | Link To This Post ID 126 | Topic : مقالات انگلیسی DISSERTATION

Geyser

 

 
Strokkur geyser, Iceland
Strokkur geyser, Iceland

A geyser is a type of hot spring that erupts periodically, ejecting a column of hot water and steam into the air. The name geyser comes from Geysir, the name of an erupting spring at Haukadalur, Iceland; that name, in turn, comes from the Icelandic verb gjósa, “to gush”.

The formation of geysers requires a favourable hydrogeology which exists in only a few places on Earth, and so they are fairly rare phenomena. About 1,000 exist worldwide, with about half of these in Yellowstone National Park, U.S..[1] Geyser eruptive activity may change or cease due to ongoing mineral deposition within the geyser plumbing, exchange of functions with nearby hot springs, earthquake influences, and human intervention.[2]

Erupting fountains of liquefied nitrogen have been observed on Neptune's moon Triton, as have possible signs of carbon dioxide eruptions from Mars' south polar ice cap. These phenomena are also often referred to as geysers. Instead of being driven by geothermal energy, they seem to rely on solar heating aided by a kind of solid-state greenhouse effect. On Triton, the nitrogen may erupt to heights of 8 km.

Contents

[hide]

[ Eruptions

1. Steam rises from heated water
2. Pulses of water swell upward
3. Surface is broken
4. Ejected water spouts upward and falls back

Geyser activity, like all hot spring activity, is caused by surface water gradually seeping down through the ground until it meets rock heated by magma. The geothermally heated water then rises back toward the surface by convection through porous and fractured rock. Geysers differ from noneruptive hot springs in their subterranean structure; many consist of a small vent at the surface connected to one or more narrow tubes that lead to underground reservoirs of water.

As the geyser fills, the water at the top of the column cools off, but because of the narrowness of the channel, convective cooling of the water in the reservoir is impossible. The cooler water above presses down on the hotter water beneath, not unlike the lid of a pressure cooker, allowing the water in the reservoir to become superheated, i.e. to remain liquid at temperatures well above the boiling point.

Ultimately, the temperatures near the bottom of the geyser rise to a point where boiling begins; steam bubbles rise to the top of the column. As they burst through the geyser's vent, some water overflows or splashes out, reducing the weight of the column and thus the pressure on the water underneath. With this release of pressure, the superheated water flashes into steam, boiling violently throughout the column. The resulting froth of expanding steam and hot water then sprays out of the geyser hole.

Eventually the water remaining in the geyser cools back to below the boiling point and the eruption ends; heated groundwater begins seeping back into the reservoir, and the whole cycle begins again. The duration of eruptions and time between successive eruptions vary greatly from geyser to geyser; Strokkur in Iceland erupts for a few seconds every few minutes, while Grand Geyser in the U.S. erupts for up to 10 minutes every 8–12 hours.

[ Types of geysers

Vixen Geyser in Yellowstone
Vixen Geyser in Yellowstone

There are two types of geysers: fountain geysers erupt from pools of water, typically in a series of intense, even violent, bursts; and cone geysers which erupt from cones or mounds of siliceous sinter (also known as geyserite), usually in steady jets that last anywhere from a few seconds to several minutes. Old Faithful, perhaps the best-known geyser at Yellowstone National Park, is an example of a cone geyser. Grand Geyser, the tallest predictable geyser on earth, also at Yellowstone National Park, is an example of a fountain geyser.

The intense transient forces inside erupting geysers are the main reason for their rarity. There are many volcanic areas in the world that have hot springs, mud pots and fumaroles, but very few with geysers. This is because in most places, even where other necessary conditions for geyser activity exist, the rock structure is loose, and eruptions will erode the channels and rapidly destroy any nascent geysers.

Most geysers form in places where there is volcanic rhyolite rock which dissolves in hot water and forms mineral deposits called siliceous sinter, or geyserite, along the inside of the plumbing systems. Over time these deposits cement the rock together tightly, strengthening the channel walls and enabling the geyser to persist.

Geysers are fragile phenomena and if conditions change, they can ‘die’. Many geysers have been destroyed by people throwing litter and debris into them; others have ceased to erupt due to dewatering by geothermal power plants. The Great Geysir of Iceland has had periods of activity and dormancy. During its long dormant periods, eruptions were sometimes humanly-induced — often on special occasions — by the addition of surfactants to the water. Inducing eruptions at Geysir is no longer done, as the forced eruptions were damaging the geyser's special plumbing system. Following an earthquake in Iceland in 2000 the geyser became somewhat more active again. Initially the geyser erupted about eight times a day. As of July 2003, Geysir erupts several times a week.

Hyperthermophiles produce some of the bright colors of Grand Prismatic Spring, Yellowstone National Park
Hyperthermophiles produce some of the bright colors of Grand Prismatic Spring, Yellowstone National Park

[ Biology of geysers

Main article: Thermophile, Hyperthermophile.

The specific colours of geysers derive from the fact that despite the apparently harsh conditions, life is often found in them (and also in other hot habitats) in the form of thermophilic prokaryotes. No known eukaryote can survive over 60 °C (140 °F).

In the 1960s, when the research of biology of geysers first appeared, scientists were generally convinced that no life can survive above around 73 °C (163 °F)—the upper limit for the survival of cyanobacteria, as the structure of key cellular proteins and deoxyribonucleic acid (DNA) would be destroyed. The optimal temperature for thermophilic bacteria was placed even lower, around 55 °C (131 °F).[citation needed]

However, the observations proved that it actually is possible for life to exist at high temperatures and that some bacteria prefer even temperatures higher than boiling point of water. Dozens of such bacteria are known nowadays.[citation needed] Thermophiles prefer temperatures from 50 to 70 °C whilst hyperthermophiles grow better at temperatures as high as 80 to 110 °C. As they have heat-stable enzymes that retain their activity even at high temperatures, they have been used as a source of thermostable tools, that are important in medicine and biotechnology, for example in manufacturing antibiotics, plastics, detergents (by the use of heat-stable enzymes lipases, pullulanases and proteases), and fermentation products (for example ethanol is produced).[citation needed] The fact that such bacteria exist also stretches our imagination about life on other celestial bodies, both inside and outside of solar system. Among these, the first discovered and the most important for biotechnology is Thermus aquaticus.[citation needed]

 Numbers and distribution

Eruption of White Dome Geyser in Yellowstone
Eruption of White Dome Geyser in Yellowstone

Geysers are quite rare, requiring a combination of water, heat, and fortuitous plumbing. The combination exists in few places on Earth. The five largest geyser fields in the world are:[3]

  1. Yellowstone National Park, Wyoming, United States, North America
  2. Dolina Geiserov, Kamchatka Peninsula, Russia, Asia - partially destroyed by a mudslide on June 3, 2007.
  3. El Tatio, Atacama Desert, Chile, South America
  4. Taupo Volcanic Zone, North Island, New Zealand, Oceania
  5. Iceland, Europe

There used to be two large geysers fields in NevadaBeowawe and Steamboat Springs — but they were destroyed by the installation of nearby geothermal power plants. At the plants, geothermal drilling reduced the available heat and lowered the local water table to the point that geyser activity could no longer be sustained. There are more individual geysers around the world, in California, Peru, Bolivia, Mexico, Dominica, Azores, Kenya, Slovakia and Japan, but no other large clusters.

Yellowstone is the largest geyser locale, containing thousands of hot springs, and between three and five hundred geysers. Yellowstone includes the tallest active geyser (Steamboat Geyser in Norris Geyser Basin), as well as the renowned Old Faithful Geyser, Beehive Geyser, Giantess Geyser, Lion Geyser, Plume Geyser, Aurum Geyser, Castle Geyser, Sawmill Geyser, Grand Geyser, Oblong Geyser, Giant Geyser, Daisy Geyser, Grotto Geyser, Fan & Mortar Geysers, & Riverside Geyser, all in the Upper Geyser Basin.

Many of New Zealand’s geysers have been destroyed by humans in the last century. Several New Zealand geysers have also become dormant or extinct by natural means. The main remaining field is Whakarewarewa at Rotorua. Two thirds of the geysers at Orakei Korako were flooded by the Ohakuri hydroelectric dam in 1961. The Wairakei field was lost to a geothermal power plant in 1958. The Taupo Spa field was lost when the Waikato River level was deliberately altered in the 1950s. The Rotomahana field was destroyed by the Mount Tarawera eruption in 1886. Waimangu Geyser, which existed from 1900 to 1904, was the largest geyser ever known. It ceased to erupt after a landslide covered its crater. Small numbers of geysers still exist at other places within the Taupo Volcanic Zone including Ketetahi, Tokaanu and Wai-O-Tapu.

 Misnamed geysers

In a number of places where there is geothermal activity wells have been drilled and fitted with impermeable casements that allow them to erupt like geysers. Though these so-called artificial geysers, technically known as erupting geothermal wells, are not true geysers, they can be quite spectacular. Little Old Faithful Geyser, in Calistoga, California, is probably an erupting geothermal well.[citation needed]

Sometimes drilled cold-water wells erupt in a geyser-like manner due to the build-up of pressure from dissolved carbon dioxide in the water. These are not true geysers either, but are often called cold-water geysers. The best known of these is probably Crystal Geyser, near Green River, Utah.[4]

A perpetual spouter is a natural hot spring that spouts water constantly. Some of these are incorrectly called geysers, but because they are not periodic in nature they are not considered true geysers.

[edit] Geysers on Triton

Dark streaks deposited by geysers on Triton
Dark streaks deposited by geysers on Triton

One of the great surprises of the Voyager 2 flyby of Neptune in 1989 was the discovery of geysers on its moon, Triton. Astronomers noticed dark plumes rising to some 8 km above the surface, and depositing material up to 150 km downstream.

All the geysers observed were located between 40° and 60°S, the part of Triton's surface close to the subsolar point. This indicates that solar heating, although very weak at Triton's great distance from the Sun, probably plays a crucial role. It is thought that the surface of Triton probably consists of a semi-transparent layer of frozen nitrogen, which creates a kind of greenhouse effect, heating the frozen material beneath it until it breaks the surface in an eruption. A temperature increase of just 4 K above the ambient surface temperature of 38 K could drive eruptions to the heights observed.

Geothermal energy may also be important. Unusually for a major satellite, Triton orbits Neptune in a retrograde orbit—that is, in the opposite direction to Neptune's rotation. This generates tidal forces which are causing Triton's orbit to decay, so that in several billion years time it will reach its Roche limit [1] with Neptune. The tidal forces may also generate heat inside Triton, in the same way as Jupiter's gravity generates tidal forces on Io which drive its extreme volcanic activity.

Each eruption of a Triton geyser may last up to a year, and during this time about 0.1 km³ of material may be deposited downwind. Voyager's images of Triton's southern hemisphere show many streaks of dark material laid down by geyser activity.

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Posted by نيما ساكتي at | Link To This Post ID 122 | Topic : مقالات انگلیسی DISSERTATION

Cells - Structure and Function


Important Events in the Discovery of Cells

  • 1665 - Robert Hooke looks at cork under a microscope. Calls the chambers he see "cells"
  • 1665 - 75 Anton van Leeuwenhoek, the person incorrectly given credit for the invention of the microscope (actually, he was just damn good at making and using them, and his scopes soon became the standard, and history has just given him credit as the inventor of the microscope), studies organisms living in pond water (like you did in lab). He calls them "Animalcules."
  • 1830 - German scientists Schleiden and Schawann summarize the findings of many scientists and conclude that all living organisms are made of cells. This forms the basis of the Cell Theory of Biology

The Cell Theory of Biology

  • All organisms are composed of cells
  • The cell is the structural unit of life - units smaller than cells are not alive
  • Cells arise by division of preexisting cells - spontaneous generation does not exist
  • Cells can be cultured to produce more cells
    • in vitro = outside organism or cell
    • in vivo = inside organism or cell

Properties of Cells

Cells are complex and highly organized

  • They contain numerous internal structures
  • Some are membrane bound (organelles) while others do not

Cells contain a genetic blueprint and machinery to use it

  • Genes are instructions for cells to create specific proteins
  • All cells use the same types of information
    • The genetic code is universal
    • The machinery used for synthesis is interchangeable
  • However, for this to function properly, information transfer must be error free
    • Errors are called mutations

Cells arise from the division of other cells

  • Daughter cells inherit the genes from the mother cells
  • Binary fission - cell division in bacteria
  • Mitosis - the genetic complement of each daughter cell is identical to the other and to the mother cell. This is asexual reproduction
  • Meiosis - the genetic complement of each daughter cell is reduced by half and each daughter cell is genetically unique. This is used in sexual reproduction
  • Daughter cells inherit cytoplasm and organelles from the mother cells
    • Asexual - organelles from mother cell
    • Sexual - organelles predominately from one parent
      • In eukaryotes, the chloroplasts and mitochondria come from the egg cell
      • This can be used to trace the evolutionary origin of the organism

Cells acquire and utilize energy

  • Plant cells undergo photosynthesis
    • convert light energy and CO2 to chemical energy (ATP and glucose)
  • Most cells respire
    • release energy found in organic compounds
    • convert organic compounds to CO2 and O2
    • make ATP

Cells can perform a variety of chemical reactions

  • Transform simple organic molecules into complex molecules (anabolism)
  • Breakdown complex molecules to release energy (catabolism)
  • Metabolism = all reactions performed by cells

Cells can engage in mechanical activities

  • Cells can move
  • Organelles can move
  • Cells can respond to stimuli
    • chemotaxis - movement towards chemicals
    • phototaxis - movement towards light
    • hormone responses
    • touch responses

Cells can regulate activities

  • Cells control DNA synthesis and cell division
  • Gene regulation - cells make specific proteins only when needed
  • Turn on and off metabolic pathways

Cells all contain the following structures:

  • Plasma membrane - separates the cell from the external environment
  • Cytoplasm - fluid-filled cell interior
  • Nuclear material - genetic information stored as DNA

Types of Cells

BacteriaEukaryota
Archaea
Prokaryotes
  • Pro = before; karyon = nucleus
  • relatively small - 5 to 10 um
  • lack membrane-bound organelles
  • earliest cell type

Archaea

  • Originally thought to be prokaryotes
  • relatively small - 5 to 10 um
  • lack membrane-bound organelles
  • Usually live in extreme environments (thermophiles, halophiles, etc)

Eukaryotes

  • Eu = true; karyon = nucleus
  • contain membrane-bound organelles
  • Evolved from prokaryotes by endosymbiotic association of two or more prokaryotes
  • Include Protists, Fungi, Animals, and Plants

 

Features of Prokaryotic Cells

  • Capsule - outer sticky protective layer
  • Cell Wall - rigid structure which helps the bacterium maintain its shape
    • this is in NO way the same as the cell wall of a plant cell
  • Plasma membrane - separates the cell from the environment
  • Mesosome - infolding of plasma membrane to aid in compartmentalization
  • Nucleoid - region where nakedDNA is found
  • Cytoplasm
    • semi-fluid cell interior
    • no membrane-bound organelles
    • location for metabolic enzymes
    • location of ribosomes for protein synthesis

 

Properties of Eukaryotic Cells

 

  • Features shared with Prokaryotic cells
    • Rigid cell wall
      • Plant cells, some Fungi, some Protists
      • Animal cells lack cell wall
    • Plasma membrane
    • Cytoplasm with ribosomes
    • Nuclear material
  • Cytoskeleton - flexible tubular scaffold of microfilaments
    • maintains cell shape and provides support
    • anchors organelles & enzymes to specific regions of the cell
    • contractility and movement (amoeboid movement)
    • intracellular transport - tracks for vesicle and organelle movement by motor proteins
  • Cytoskeleton components
    • Microfilaments
      • solid protein (actin) which is assembled at one end and disassembled at the other end
    • Intermediate filaments - rope-like fibrous proteins
      • provide structural reinforcement
      • anchor organelles
      • keep nucleus in place
    • Microtubules - hollow tubes of tubulin (a globular protein)
      • maintains cell shape
      • anchor organelles
      • movement of organelles
      • track for motor proteins
  • Cilia and Flagella - involved in cellular movement
    • composed of microtubules
    • cilia - short, numerous, complex
    • flagella - longer, fewer, less complex
    • both arranged in a 9+2 pattern with dynein arms projecting outward
  • Nucleus
    • Double membrane with pores
    • Outer membrane continuous with ER
    • Nuclear matrix - protein-containing fibrilar network
    • Nucleoplasm - the fluid substance in which the solutes of the nucleus are dissolved
    • Chromosomes - protein and DNA complexes
    • Nucleolus - involved in the synthesis and assembly of ribosomes
  • Endomembrane System
    • Endoplasmic Reticulum - an extensive membranous network continuous with the outer nuclear membrane.
      • Rough ER - has ribosomes and is involved in secreted protein synthesis
      • Smooth ER - lacks ribosomes and is involved in membrane lipid synthesis
    • Golgi Apparatus
      • Flattened vesicles in stacks which receive protein from ER
      • Form secretory vesicles to transport proteins to different parts of the cell (vacuole, lysosome, etc) or for secretion
      • cis face - "receiving" side of Golgi apparatus
      • trans face - "shipping" side of Golgi apparatus
    • Lysosome
      • found only in animal cells
      • contain enzymes for use in the hydrolytic breakdown of macromolecules
    • Peroxisome
      • Eukaryotic organelle that degrades fatty acids and amino acids
      • Also degrades the resulting hydrogen peroxide
  • Plant Central Vacuole - major storage space in center of plant cell with many functions
    • Digestive - break down of macromolecules
    • Storage - ions, sugars, amino acids, toxic waste
    • Maintain cell rigidity - high ionic concentration generates high water potential

Images of Vesicle Transport Between Endomembrane Organelles  

  • Mitochondria
    • Found in ALL eukaryotic cells (yes, even in plant cells)
    • Site of aerobic respiration
      • sugars + O2 - - > ATP + CO2 + H2O
    • Contain DNA which codes for mitochondrial proteins, ribosomes, etc.
    • Divide by a process similar to binary fission when cell divides
    • Enclosed in a double membrane system
      • Inner Membrane forms the Cristae (invaginations into interior region)
        • Site of energy generation
      • Matrix is the soluble portion of the mitochondira
        • Site of carbon metabolism
        • Location of mDNA
        • Site of mitochondrial protein synthesis
  • Chloroplasts
    • Found only in plant cells
    • Site of photosynthesis
      • conversion of solar energy to chemical energy in the form of ATP and sugars
    • Contain DNA which codes for chloroplast proteins, ribosomes, etc.
    • Divide when plant cell divides
    • Enclosed in a double membrane envelope that does not invaginate into the chloroplast
    • Thylakoid is a third internal membrane system
      • contains membrane-bound photosynthetic pigments
      • site of photochemistry (the conversion of light energy to ATP)
      • site of O2 generation
    • Stroma is soluable portion of chloroplast
      • site of CO2 fixation
      • site of sugar synthesis (carbon metabolism)
      • location of cpDNA
      • site of chloroplast protein synthesis
  • Ribosomes  
    • Technically not an organelle, since there is no membrane, but they are prominent cellular structures and usually lumped in with the organelles
    • The "factories" of the cell - involved in protein synthesis
    • Facilitate the specific coupling of tRNA anticodons with mRNA codons during protein synthesis
    • May either be free or bound to ER
    • Made up of two subunits, the large and the small subunit
    • Both subunits are constructed out of protein and RNA (called rRNA)
    • The ribosomes of prokaryotes and eukaryotes vary slightly with regard to size and shape

Endosymbiotic Origin of Chloroplasts and Mitochondria

  • Free-living prokaryote eaten by host
  • Genes transferred to host nucleus
  • Some genes retained but most lost - can no longer survive outside of host
  • Symbiotic relationship
    • photosynthetic symbiont provides sugar - degenerates to form chloroplast
    • aerobic symbiont provides a more efficient energy generation system - degenerates to form mitochondria
    • host provides stable environment, nutrients, energy, and most proteins
  • Evidence for Endosymbiotic Theory
    • Chloroplasts and mitochondria have DNA
      • does not code for all proteins
      • some genes in nucleus
      • proteins imported rom cytoplasm
    • Organelle proteins similar to bacterial form
    • Ribosome structure and metabolic enzymes more similar to bacterial forms

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 Animal Cell Mitochondria
tommy leep

 

 

http://www.mindquest.net/biology/cell-biology/cell-biology.html accessed 2/13/00

Function
The mitochondrion, present in plant and animal cells, is essentially the power of the cell.  Structurally, the mitochondrion has a double-layered, smooth outer membrane with inner folds called cristae, the inner membrane in which energy collecting chemical reactions takes place.  The membrane-bound organelle is about the size of bacteria and varies in shape depending on cell type.   There can exist up to 1,000 mitochondria in a cell.  The cristae, the convoluted inner membrane of mitochondria, greatly increase the inner membrane’s surface area.  Through a series of complex electron transport chains, which are embedded in the cristae membrane, energy is provided for the synthesis of ATP.  The cell’s ability to derive ATP from metabolic oxidation is a result of a complex chain of events and reactions.

 

Working Together
The mitochondrion, the second largest organelle with unique genetic structure, performs many functions, including the recycling of product of the cell’s metabolism, the formation of urea, transportation of proteins, and the synthesis of ATP.  Mitochondria are mostly individual organelles that operate on their own without much interaction with other organelles in the cytoplasm.  The “powerhouses of the cell” have their own genetic code and are basically their own unique cell.  It is extremely important in a cell that energy be extracted by the mitochondria, but the organelle doesn’t have to cooperate with others to do so.

 

Cool Links
http://treebiol.forest.wisc.edu/forestry415/lecture5/mitochon.htm
http://www-lmmb.ncifcrf.gov/mitoDat/
http://www.cbc.umn.edu/~mwd/cell_www/chapter2/mitochondria.html

 

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Anatomy of the Animal Cell

Anatomy of the Animal Cell

The animal cell is a typical eukaryotic cell. It ranges in size between 1 and 100 micrometers and is surrounded by a plasma membrane, which forms a selective barrier allowing nutrients to enter and waste products to leave. The cytoplasm contains a number of specialized organelles, each of which is surrounded by a membrane. There is only one nucleus and it contains all the genetic information necessary for cell growth and reproduction. The other organelles occur in multiple copies and carry out the various functions of the cell, allowing it to survive and participate in the functioning of the larger organism.

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Treatment

 http://prowl.blogfa.com

The replication cycle of HIV


  1. HIV binds to CD4 cell surface molecules, entry into the cell also requires binding to co-receptorsCXCR4 and CCR5). This step can be inhibited by fusion/entry inhibitors.
  2. HIV is uncoated inside the cell and reverse transcriptase copies genomic RNA into DNA, making errors at a frequence of about one per replication cycle. Reverse transcriptase inhibitors were the first class of HIV inhibitors to be used as drugs.
  3. Viral DNA can integrate into DNA and become a part of the cellular genome. This step makes the infection irreversible, and may mean that eliminating the virus from an infected individual is not possible. Integrase inhibitors are designed to block this step of infection.
  4. The virus uses cellular machinery to synthesize viral proteins. Several of these are long amino acid chains which must be cleaved by a specific viral protease before new viral particles can become active. Protease inhibitors block viral maturation at this step.

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New drugs are rapidly being developed

The drugs interfer with HIV replication at multiple steps as indicated above (integrase inhibitors in developmental stages only). HAART or highly active anti-retroviral therapy with a combination of drugs results in a dramatic reduction in viral levels. HAART coupled with improved treatments of HIV caused secondary infections has dramatically improved survival for HIV infected patients.

Deaths in the United States.


Image courtesy of HIV Insight, Nature 410,966 (01). Used with permission.

HAART increases survival, but does not eliminate the virus. CD4+ T cells maturing in the thymus can be infected and harbor virus indefinately. Virus levels rise rapidly if HAART is discontinued.

Immune function is significantly restored in treated individuals. However, the drug regime is difficult and accompanied by complications that may prevent continued treatments.

RNA viruses rapidly mutate. 10 billion HIV-1 virions are generated daily, with a rate giving one mutation for each new genome of 9,2000 nucleotides per replication cycle. Genomes with every possible mutation and many double mutations are generated daily. The rapidly changing virus makes therapy difficult.

Resistant virus emerges at high frequency.

Therapy is very expensive, and cannot be afforded by most countries with significant numbers of HIV infected people. Providing affordable drugs throughout the world remains a difficult goal for world health.

3 by 5; an international effort to increase the availability of antiretroviral drugs, with a goal of treating 3 million HIV infected people by 2005.

View animations of the HIB lifecycle and descriptions of drug actions, courtesy of CellsAlive. http://www.cellsalive.com/hiv0.htm


Vaccines

  • Vaccination to activate a long term immune response has erradicated small pox, and has nearly eliminated polio as a human disease. Major efforts are underway to develop HIV vaccines.

  • The obsticles are formidable. HIV replicates very rapidly, and errors in reverse transcription rapidly change the virus.

  • The ability of the virus to remain a part of the cellular genome, and become activated when cells of the immune system become active means that infected individuals harbor virus for the lifetime of a person.

  • A major problem is that HIV causes a vigorous immune response that affords some protection against the virus, but the process of protection can also activate virus replication and cause the disease to progress. We don't know what aspects of the immune response afford protection, and what steps cause progression. If these are different, it should be possible to increase protection and decrease progression. Studies of the immune system and HIV remain a very high priority.


Education

Thialand recorded its first AIDS case in 1984, and in 1991 initiated an condom education campaign. The data show a dramatic drop in prevalence in military recruits, a success attributed to the condom education program. Some African countries, hardest hit with AIDS have also shown that promoting safe sex and the use of condoms.

  • One offical early in the AIDS epidemic said that education was our most important weapon against AIDS. This remains true today.

  • Abstaining from sex and avoiding any sharing of fluids (blood transfusion, needles, etc.) protects against AIDS.

  • Eliminating "harmful behaviors" such as having multiple partners with unprotected sex and IV drug use would stop the world wide AIDS crisis.

 

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Biology

 

From http://prowl.blogfa.com/

 
 
Escherichia coli Tree fern
Goliath beetle Gazelle
Biology studies the variety of life (clockwise from top-left) E. coli, tree fern, gazelle, Goliath beetle

Biology (from Greek: βίος, bio, "life"; and λόγος, logos, "speech" lit. "to talk about life"), also referred to as the biological sciences, is the scientific study of life. Biology examines the structure, function, growth, origin, evolution, and distribution of living things. It classifies and describes organisms, their functions, how species come into existence, and the interactions they have with each other and with the natural environment. Four unifying principles form the foundation of modern biology: cell theory, evolution, genetics and homeostasis.

Biology as a separate science was developed in the nineteenth century, as scientists discovered that organisms shared fundamental characteristics. Biology is now a standard subject of instruction at schools and universities around the world, and over a million papers are published annually in a wide array of biology and medicine journals.[1]

Most biological sciences are specialized disciplines. Traditionally, they are grouped by the type of organism being studied: botany, the study of plants; zoology, the study of animals; and microbiology, the study of microorganisms. The fields within biology are further divided based on the scale at which organisms are studied and the methods used to study them: biochemistry examines the fundamental chemistry of life; molecular biology studies the complex interactions of systems of biological molecules; cellular biology examines the basic building block of all life, the cell; physiology examines the physical and chemical functions of the tissues and organ systems of an organism; and ecology examines how various organisms and their environment interrelate.

Contents

[ Foundations of modern biology

 

  • Cell theory. All living organisms are made of at least one cell, the basic unit of function in all organisms. In addition, the core mechanisms and chemistry of all cells in all organisms are similar, and cells emerge only from preexisting cells that multiply through cell division.
  • Gene theory. A living organism's traits are encoded in their DNA, the fundamental component of genes. In addition, traits are passed on from one generation to the next by way of these genes. All information flows from genes to the phenotype, the observable physical or biochemical characteristics of the organism. Although the phenotype expressed by the gene may adapt to the environment of the organism, that information is not transferred back to the genes. Only through the process of evolution do genes change in response to the environment.
  • Homeostasis. The physiological processes that allow an organism to maintain its internal environment notwithstanding its external environment.

 Cell theory

Main article: Cell theory

The cell is the fundamental unit of life. Cell theory states that all living things are composed of one or more cells, or the secreted products of those cells, for example, shell and bone. Cells arise from other cells through cell division, and in multicellular organisms, every cell in the organism's body is produced from a single cell in a fertilized egg. Furthermore, the cell is considered to be the basic part of the pathological processes of an organism.[2]

 Evolution

Main article: Evolution

A central organizing concept in biology is that life changes and develops through evolution and that all lifeforms known have a common origin (see Common descent). This has led to the striking similarity of units and processes discussed in the previous section. Charles Darwin established evolution as a viable theory by articulating its driving force, natural selection (Alfred Russel Wallace is recognized as the co-discoverer of this concept). Darwin theorized that species and breeds developed through the processes of natural selection as well as by artificial selection or selective breeding[3]. Genetic drift was embraced as an additional mechanism of evolutionary development in the modern synthesis of the theory.

The evolutionary history of the species— which describes the characteristics of the various species from which it descended— together with its genealogical relationship to every other species is called its phylogeny. Widely varied approaches to biology generate information about phylogeny. These include the comparisons of DNA sequences conducted within molecular biology or genomics, and comparisons of fossils or other records of ancient organisms in paleontology. Biologists organize and analyze evolutionary relationships through various methods, including phylogenetics, phenetics, and cladistics. For a summary of major events in the evolution of life as currently understood by biologists, see evolutionary timeline.

Up into the 19th century, it was commonly believed that life forms could appear spontaneously under certain conditions (see spontaneous generation). This misconception was challenged by William Harvey's diction that "all life [is] from [an] egg" (from the Latin "Omne vivum ex ovo"), a foundational concept of modern biology. It simply means that there is an unbroken continuity of life from its initial origin to the present time.

A group of organisms shares a common descent if they share a common ancestor. All organisms on the Earth both living and extinct have been or are descended from a common ancestor or an ancestral gene pool. This last universal common ancestor of all organisms is believed to have appeared about 3.5 billion years ago. Biologists generally regard the universality of the genetic code as definitive evidence in favor of the theory of universal common descent (UCD) for all bacteria, archaea, and eukaryotes (see: origin of life).

Evolution does not always give rise to progressively more complex organisms. For example, the process of dysgenics has been observed among the human population.[4]

 

 Gene theoryhttp://prowl.blogfa.com/

Schematic representation of DNA, the primary genetic material.
Main article: Gene

Biological form and function are created from and passed on to the next generation by genes, which are the primary units of inheritance. Physiological adaption to an organism's environment cannot be coded into its genes and cannot be inherited by its offspring (see Lamarckism). Remarkably, widely different organisms, including bacteria, plants, animals, and fungi, all share the same basic machinery that copies and transcribes DNA into proteins. For example, bacteria with inserted human DNA will correctly yield the corresponding human protein.

The total complement of genes in an organism or cell is known as its genome which is stored on one or more chromosomes. A chromosome is a single, long DNA strand on which thousands of genes, depending on the organism, are encoded. When a gene is active, the DNA code is transcribed into an RNA copy of the gene's information. A ribosome then translates the RNA into a structural protein or catalytic protein.

 Homeostasis

Main article: Homeostasis

Homeostasis is the ability of an open system to regulate its internal environment to maintain a stable condition by means of multiple dynamic equilibrium adjustments controlled by interrelated regulation mechanisms. All living organisms, whether unicellular or multicellular, exhibit homeostasis. Homeostasis exists at the cellular level, for example cells maintain a stable internal acidity (pH); and at the level of the organism, for example warm-blooded animals maintain a constant internal body temperature. Homeostasis is a term that is also used in association with ecosystems, for example, the atmospheric concentration of carbon dioxide on Earth has been regulated by the concentration of plant life on Earth because plants remove more carbon dioxide from the atmosphere during the daylight hours than they emit to the atmosphere at night. Tissues and organs can also maintain homeostasis.

See also: Health.

 Research

 Structural

Schematic of typical animal cell depicting the various organelles and structures.

Molecular biology is the study of biology at a molecular level. This field overlaps with other areas of biology, particularly with genetics and biochemistry. Molecular biology chiefly concerns itself with understanding the interactions between the various systems of a cell, including the interrelationship of DNA, RNA, and protein synthesis and learning how these interactions are regulated.

Cell biology studies the physiological properties of cells, as well as their behaviors, interactions, and environment. This is done both on a microscopic and molecular level. Cell biology researches both single-celled organisms like bacteria and specialized cells in multicellular organisms like humans.

Understanding cell composition and how they function is fundamental to all of the biological sciences. Appreciating the similarities and differences between cell types is particularly important in the fields of cell and molecular biology. These fundamental similarities and differences provide a unifying theme, allowing the principles learned from studying one cell type to be extrapolated and generalized to other cell types.

Genetics is the science of genes, heredity, and the variation of organisms. Genes encode the information necessary for synthesizing proteins, which in turn play a large role in influencing (though, in many instances, not completely determining) the final phenotype of the organism. In modern research, genetics provides important tools in the investigation of the function of a particular gene, or the analysis of genetic interactions. Within organisms, genetic information generally is carried in chromosomes, where it is represented in the chemical structure of particular DNA molecules.

Developmental biology studies the process by which organisms grow and develop. Originating in embryology, modern developmental biology studies the genetic control of cell growth, differentiation, and "morphogenesis," which is the process that gives rise to tissues, organs, and anatomy. Model organisms for developmental biology include the round worm Caenorhabditis elegans, the fruit fly Drosophila melanogaster, the zebrafish Brachydanio rerio, the mouse Mus musculus, and the weed Arabidopsis thaliana.

Physiological

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Main articles: Physiology and Anatomy

Physiology studies the mechanical, physical, and biochemical processes of living organisms by attempting to understand how all of the structures function as a whole. The theme of "structure to function" is central to biology. Physiological studies have traditionally been divided into plant physiology and animal physiology, but the principles of physiology are universal, no matter what particular organism is being studied. For example, what is learned about the physiology of yeast cells can also apply to human cells. The field of animal physiology extends the tools and methods of human physiology to non-human species. Plant physiology also borrows techniques from both fields.

Anatomy is an important branch of physiology and considers how organ systems in animals, such as the nervous, immune, endocrine, respiratory, and circulatory systems, function and interact. The study of these systems is shared with medically oriented disciplines such as neurology and immunology.

 Evolution

In population genetics the evolution of a population of organisms is sometimes depicted as if travelling on a fitness landscape. The arrows indicate the preferred flow of a population on the landscape, and the points A, B, and C are local optima. The red ball indicates a population that moves from a very low fitness value to the top of a peak.

Evolution is concerned with the origin and descent of species, as well as their change over time, and includes scientists from many taxonomically-oriented disciplines. For example, it generally involves scientists who have special training in particular organisms such as mammalogy, ornithology, botany, or herpetology, but use those organisms as systems to answer general questions about evolution. Evolutionary biology is mainly based on paleontology, which uses the fossil record to answer questions about the mode and tempo of evolution, as well as the developments in areas such as population genetics and evolutionary theory. In the 1980s, developmental biology re-entered evolutionary biology from its initial exclusion from the modern synthesis through the study of evolutionary developmental biology. Related fields which are often considered part of evolutionary biology are phylogenetics, systematics, and taxonomy.

Up into the 19th century, it was believed that life forms were being continuously created under certain conditions (see spontaneous generation). This misconception was challenged by William Harvey's diction that "all life [is] from [an] egg" (from the Latin "Omne vivum ex ovo"), a foundational concept of modern biology. It simply means that there is an unbroken continuity of life from its initial origin to the present time.

A group of organisms shares a common descent if they share a common ancestor. All organisms on the Earth have been and are descended from a common ancestor or an ancestral gene pool. This last universal common ancestor of all organisms is believed to have appeared about 3.5 billion years ago. Biologists generally regard the universality of the genetic code as definitive evidence in favor of the theory of universal common descent (UCD) for all bacteria, archaea, and eukaryotes (see: origin of life).

The two major traditional taxonomically-oriented disciplines are botany and zoology. Botany is the scientific study of plants. Botany covers a wide range of scientific disciplines that study the growth, reproduction, metabolism, development, diseases, and evolution of plant life. Zoology involves the study of animals, including the study of their physiology within the fields of anatomy and embryology. The common genetic and developmental mechanisms of animals and plants is studied in molecular biology, molecular genetics, and developmental biology. The ecology of animals is covered under behavioral ecology and other fields.[5]

 Taxonomy

A phylogenetic tree of all living things, based on rRNA gene data, showing the separation of the three domains bacteria, archaea, and eukaryotes as described initially by Carl Woese. Trees constructed with other genes are generally similar, although they may place some early-branching groups very differently, presumably owing to rapid rRNA evolution. The exact relationships of the three domains are still being debated.
Main article: Taxonomy

Classification is the province of the disciplines of systematics and taxonomy. Taxonomy places organisms in groups called taxa, while systematics seeks to define their relationships with each other. This classification technique has evolved to reflect advances in cladistics and genetics, shifting the focus from physical similarities and shared characteristics to phylogenetics.

Traditionally, living things have been divided into five kingdoms:[6]http://prowl.blogfa.com/

Monera -- Protista -- Fungi -- Plantae -- Animalia

However, many scientists now consider this five-kingdom system to be outdated. Modern alternative classification systems generally begin with the three-domain system:[7]

Archaea (originally Archaebacteria) -- Bacteria (originally Eubacteria) -- Eukarya

These domains reflect whether the cells have nuclei or not, as well as differences in the cell exteriors.

Further, each kingdom is broken down continuously until each species is separately classified. The order is:

The scientific name of an organism is obtained from its genus and species. For example, humans would be listed as Homo sapiens. Homo would be the genus and sapiens is the species. Whenever writing the scientific name of an organism, it is proper to capitalize the first letter in the genus and put all of the species in lowercase; in addition the entire term would be put in italics or underlined. The term used for classification is called taxonomy.

There is also a series of intracellular parasites that are progressively "less alive" in terms of metabolic activity:

Viruses -- Viroids -- Prions

The dominant classification system is called Linnaean taxonomy, which includes ranks and binomial nomenclature. How organisms are named is governed by international agreements such as the International Code of Botanical Nomenclature (ICBN), the International Code of Zoological Nomenclature (ICZN), and the International Code of Nomenclature of Bacteria (ICNB). A fourth Draft BioCode was published in 1997 in an attempt to standardize naming in these three areas, but it has yet to be formally adopted. The Virus International Code of Virus Classification and Nomenclature (ICVCN) remains outside the BioCode.

 Environmental

Main articles: Ecology, Ethology, Behavior, and Biogeography

Ecology studies the distribution and abundance of living organisms, and the interactions between organisms and their environment. The environment of an organism includes both its habitat, which can be described as the sum of local abiotic factors such as climate and ecology, as well as the other the organisms that share its habitat. Ecological systems are studied at several different levels, from individuals and populations to ecosystems and the biosphere. As can be surmised, ecology is a science that draws on several disciplines.

Ethology studies animal behavior (particularly of social animals such as primates and canids), and is sometimes considered a branch of zoology. Ethologists have been particularly concerned with the evolution of behavior and the understanding of behavior in terms of the theory of natural selection. In one sense, the first modern ethologist was Charles Darwin, whose book "The Expression of the Emotions in Man and Animals" influenced many ethologists.

Biogeography studies the spatial distribution of organisms on the Earth, focusing on topics like plate tectonics, climate change, dispersal and migration, and cladistics.

Every living thing interacts with other organisms and its environment. One reason that biological systems can be difficult to study is that so many different interactions with other organisms and the environment are possible, even on the smallest of scales. A microscopic bacterium responding to a local sugar gradient is responding to its environment as much as a lion is responding to its environment when it searches for food in the African savannah. For any given species, behaviors can be co-operative, aggressive, parasitic or symbiotic. Matters become more complex when two or more different species interact in an ecosystem. Studies of this type are the province of ecology.

 History

Although the concept of biology as a single coherent field arose in the 19th century, the biological sciences emerged from traditions of medicine and natural history reaching back to Galen and Aristotle in ancient Greece. During the Renaissance and early modern period, biological thought was revolutionized by a renewed interest in empiricism and the discovery of many novel organisms. Prominent in this movement were Vesalius and Harvey, who used experimentation and careful observation in physiology, and naturalists such as Linnaeus and Buffon who began to classify the diversity of life and the fossil record, as well as the development and behavior of organisms. Microscopy revealed the previously unknown world of microorganisms, laying the groundwork for cell theory. The growing importance of natural theology, partly a response to the rise of mechanical philosophy, encouraged the growth of natural history.[8][9]

Over the 18th and 19th centuries, biological sciences such as botany and zoology became increasingly professional scientific disciplines. Lavoisier and other physical scientists began to connect the animate and inanimate worlds through physics and chemistry. Explorer-naturalists such as Alexander von Humboldt investigated the interaction between organisms and their environment, and the ways this relationship depends on geography—laying the foundations for biogeography, ecology and ethology. Naturalists began to reject essentialism and consider the importance of extinction and the mutability of species. Cell theory provided a new perspective on the fundamental basis of life. These developments, as well as the results from embryology and paleontology, were synthesized in Charles Darwin's theory of evolution by natural selection. The end of the 19th century saw the fall of spontaneous generation and the rise of the germ theory of disease, though the mechanism of inheritance remained a mystery.[5][10][8]

In the early 20th century, the rediscovery of Mendel's work led to the rapid development of genetics by Thomas Hunt Morgan and his students, and by the 1930s the combination of population genetics and natural selection in the "neo-Darwinian synthesis". New disciplines developed rapidly, especially after Watson and Crick proposed the structure of DNA. Following the establishment of the Central Dogma and the cracking of the genetic code, biology was largely split between organismal biology—the fields that deal with whole organisms and groups of organisms—and the fields related to cellular and molecular biology. By the late 20th century, new fields like genomics and proteomics were reversing this trend, with organismal biologists using molecular techniques, and molecular and cell biologists investigating the interplay between genes and the environment, as well as the genetics of natural populations of organisms.[11][12][13][14]

 See also

 References

  1. ^ King, TJ & Roberts, MBV (1986). Biology: A Functional Approach. Thomas Nelson and Sons. ISBN 978-0174480358. 
  2. ^ Mazzarello, P (1999). "A unifying concept: the history of cell theory". Nature Cell Biology 1: E13-E15. doi:10.1038/8964. 
  3. ^ Darwin, Charles (1859). On the Origin of Species, 1st, John Murray
  4. ^ Lynn, Richard; Van Court, Marilyn (2004). "New evidence of dysgenic fertility for intelligence in the United States". Intelligence 32 (2): p. 193. Ablex Pub.. ISSN 0160-2896. 
  5. ^ a b Futuyma, DJ (2005). Evolution. Sinauer Associates. ISBN 978-0878931873. 
  6. ^ Margulis, L; Schwartz, KV (1997). Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth, 3rd edition, WH Freeman & Co. ISBN 978-0716731832. 
  7. ^ Woese C, Kandler O, Wheelis M (1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eukarya.". Proc Natl Acad Sci U S A 87 (12): 4576-9. ISSN 0027-8424. PMID 2112744. 
  8. ^ a b Mayr, E (1985). The Growth of Biological Thought. Belknap Press. ISBN 978-0674364462. 
  9. ^ Magner, LN (2002). A History of the Life Sciences. TF-CRC. ISBN 978-0824708245. 
  10. ^ Coleman, W (1978). Biology in the Nineteenth Century: Problems of Form, Function and Transformation. Cambridge University Press. ISBN 978-0521292931. 
  11. ^ Allen, GE (1978). Life Science in the Twentieth Century. Cambridge University Press. ISBN 978-0521292962. 
  12. ^ Fruton, JS (1999). Proteins, Enzymes, Genes: The Interplay of Chemistry and Biology. Yale University Press. ISBN 978-0300076080. 
  13. ^ Morange, M & Cobb, M (2000). A History of Molecular Biology. Harvard University Press. ISBN 978-0674001695. 
  14. ^ Smocovitis, VB (1996). Unifying Biology. Princeton University Press. ISBN 978-0691033433. 

 Further reading

  • Alberts, Bruce; Johnson, A, Lewis, J, Raff, M, Roberts, K & Walter, P (2002). Molecular Biology of the Cell, 4th edition, Garland. ISBN 978-0815332183. 
  • Begon, Michael; Townsend, CR & Harper, JL (2005). Ecology: From Individuals to Ecosystems, 4th edition, Blackwell Publishing Limited. ISBN 978-1405111171. 
  • Campbell, Neil (2007). Biology, 7th edition, Benjamin-Cummings Publishing Company. ISBN 0-8053-7146-X. 
  • Colinvaux, Paul (1979). Why Big Fierce Animals are Rare: An Ecologist's Perspective, reissue edition, Princeton University Press. ISBN 0691023646. 
  • Hoagland, Mahlon (2007). The Way Life Works, reprint edition, Jones and Bartlett Publishers inc. ISBN 076371688X. 
  • Janovy, John Jr. (2007). On Becoming a Biologist, 2nd edition, Bison Books. ISBN 0803276206. 
  • Johnson, George B. (2007). Biology, Visualizing Life. Holt, Rinehart, and Winston. ISBN 0-03-016723-X. 
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